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MICROCARD Publications

journal articles

1. Omer Berenfeld, Valentina Corino, Axel Loewe, Juan Pablo Martínez, and Jose F Rodriguez Matas. Editorial: Atrial Fibrillation - Technology for Diagnosis, Monitoring, and Treatment.
   Frontiers in Physiology, vol. 13, article nr. 848096, 2022. [link]  [bibtex] 
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   @article{EditorialAF_Frontiers,
    article_number = {848096},
    author = {Omer Berenfeld and Valentina Corino and Axel Loewe and Juan Pablo Martínez and Jose F Rodriguez Matas},
    doi = {10.3389/fphys.2022.848096},
    journal = {Frontiers in Physiology},
    pages = {848096},
    title = {Editorial: {A}trial Fibrillation - Technology for Diagnosis, Monitoring, and Treatment},
    url = {https://dx.doi.org/10.3389/fphys.2022.848096},
    volume = {13},
    year = {2022}
   }
2. Felix Bach*, Jochen Klar*, Axel Loewe*, Jorge Sánchez*, Gunnar Seemann*, Yung-Lin Huang*, and Robert Ulrich*. The openCARP CDE – Concept for and implementation of a sustainable collaborative development environment for research software.
   Bausteine Forschungsdatenmanagement, vol. 2022, no. 1, 2022. [link]  [bibtex] 
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   @article{cde-fdm,
    author = {Bach*, Felix and Klar*, Jochen and Loewe*, Axel and Sánchez*, Jorge and Seemann*, Gunnar and Huang*, Yung-Lin and Ulrich*, Robert},
    doi = {10.17192/bfdm.2022.1.8368},
    journal = {Bausteine Forschungsdatenmanagement},
    number = {1},
    title = {The {openCARP CDE} -- Concept for and implementation of a sustainable collaborative development environment for research software},
    url = {https://dx.doi.org/10.17192/bfdm.2022.1.8368},
    volume = {2022},
    year = {2022}
   }
3. Jorge Sánchez, Beatriz Trenor, Javier Saiz, Olaf Dössel, and Axel Loewe. Fibrotic Remodeling during Persistent Atrial Fibrillation: In Silico Investigation of the Role of Calcium for Human Atrial Myofibroblast Electrophysiology.
   Cells, vol. 10, pp. 2852, 2021. [link]  [bibtex] 
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   @article{sanchez-myofib,
    author = {Sánchez, Jorge and Trenor, Beatriz and Saiz, Javier and Dössel, Olaf and Loewe, Axel},
    doi = {10.3390/cells10112852},
    journal = {Cells},
    pages = {2852},
    title = {Fibrotic Remodeling during Persistent Atrial Fibrillation: In Silico Investigation of the Role of Calcium for Human Atrial Myofibroblast Electrophysiology},
    url = {https://dx.doi.org/10.3390/cells10112852},
    volume = {10},
    year = {2021}
   }

conference articles

1. Nicolas Alejandro Barnafi, Ngoc Monica Mai Huynh, Luca Franco Pavarino, and Simone Scacchi. Parallel nonlinear solvers in computational cardiac electrophysiology..
   In MathMod2022 (10th Vienna International Conference on Mathematical Modelling), Vienna, Austria, July 2022. [bibtex] 
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   @inproceedings{huynh_2022,
    address = {Vienna, Austria},
    author = {Barnafi, Nicolas Alejandro  and Huynh, Ngoc Monica Mai and Pavarino, Luca Franco and Scacchi, Simone},
    booktitle = {In MathMod2022 (10th Vienna International Conference on Mathematical Modelling)},
    month = {July},
    title = {Parallel nonlinear solvers in computational cardiac electrophysiology.},
    year = {2022}
   }
2. Mark Potse, Luca Cirrottola, and Algiane Froehly. A practical algorithm to build geometric models of cardiac muscle structure.
   8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), Oslo, Norway, June 2022. [bibtex] 
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   @inproceedings{potse-eccomas22,
    address = {Oslo, Norway},
    author = {Potse, Mark and Cirrottola, Luca and Froehly, Algiane},
    booktitle = {8th European Congress on Computational Methods in
   Applied Sciences and Engineering (ECCOMAS)},
    month = {June},
    title = {A practical algorithm to build geometric models of
   cardiac muscle structure},
    year = {2022}
   }
3. Simone Pezzuto, Giacomo Rosilho de Souza, and Rolf Krause. Boundary integral discretization of the cell-to-cell bidomain model of cardiac electrophysiology.
   8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), Oslo, Norway, June 2022. [bibtex] 
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   @inproceedings{pezzuto-eccomas22,
    address = {Oslo, Norway},
    author = {Pezzuto, Simone and Rosilho de Souza, Giacomo and Krause, Rolf},
    booktitle = {8th European Congress on Computational Methods in
   Applied Sciences and Engineering (ECCOMAS)},
    month = {June},
    title = {Boundary integral discretization of the cell-to-cell
   bidomain model of cardiac electrophysiology},
    year = {2022}
   }
4. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Parallel-in-time multirate explicit stabilized method for the monodomain model in cardiac electrophysiology.
   7th International Conference on Computational and Mathematical Biomedical Engineering (CMBE22), Milan, Italy, June 2022. [bibtex] 
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   @inproceedings{rosilhodesouza-cmbe22,
    address = {Milan, Italy},
    author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
    booktitle = {7th International Conference on Computational and
   Mathematical Biomedical Engineering (CMBE22)},
    month = {June},
    organization = {CMBE},
    title = {Parallel-in-time multirate explicit stabilized method
   for the monodomain model in cardiac electrophysiology},
    year = {2022}
   }
5. Mark Potse. Microscale cardiac electrophysiology on exascale supercomputers.
   SIAM Conference on Parallel Processing for Scientific Computing (PP22), Seattle, WA, USA, February 2022. [bibtex] 
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   @inproceedings{potse-pp22,
    address = {Seattle, WA, USA},
    author = {Potse, Mark},
    booktitle = {SIAM Conference on Parallel Processing for Scientific Computing (PP22)},
    month = {February},
    organization = {SIAM},
    title = {Microscale cardiac electrophysiology on exascale supercomputers},
    year = {2022}
   }

invited lectures

1. Terry cojean, Fritz Göbel, and Marie Houillon. Porting the openCARP cardiac electrophysiology simulation framework to GPU architectures.
   Fifth ISC Workshop on HPC Applications in Precision Medecine, Hamburg, Germany, 2 June 2022. [bibtex] 
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   @lecture{2022_OpenCARP_Ginkgo_HAPM_Workshop,
    address = {Hamburg, Germany},
    author = {cojean, Terry and Göbel, Fritz and Houillon, Marie},
    month = {June},
    publisher = {Fifth ISC Workshop on HPC Applications in Precision Medecine},
    title = {Porting the openCARP cardiac electrophysiology simulation framework to GPU architectures},
    year = {2022}
   }
2. Axel Loewe. Computational Cardiac Modeling – Synergies with Machine Learning.
   Annual Meeting of the German Cardiac Society, Mannheim, Germany, 22 April 2022. [bibtex] 
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   @lecture{loewe-DGK22,
    address = {Mannheim, Germany},
    author = {Axel Loewe},
    month = {April},
    publisher = {Annual Meeting of the German Cardiac Society},
    title = {Computational Cardiac Modeling -- Synergies with Machine Learning},
    year = {2022}
   }
3. Mark Potse. MICROCARD: Numerical modeling of cardiac electrophysiology at the cellular scale.
   OpenCARP Contributor Meeting, online, 14 March 2022. [bibtex] 
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   @lecture{potse-openCarpCM22,
    address = {online},
    author = {Mark Potse},
    month = {March},
    publisher = {OpenCARP Contributor Meeting},
    title = {MICROCARD: Numerical modeling of cardiac electrophysiology at the cellular scale},
    year = {2022}
   }
4. Vincent Loechner. Modern Compiler Technology to Optimize Code From Ionic Models.
   Colloquium of the ITI IRMIA++, Université de Strasbourg, France, 17 March 2022. [bibtex] 
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   @lecture{loechner-IRMIA22,
    address = {Université de Strasbourg, France},
    author = {Vincent Loechner},
    month = {March},
    publisher = {Colloquium of the ITI IRMIA++},
    title = {Modern Compiler Technology to Optimize Code From Ionic Models},
    year = {2022}
   }
5. Mark Potse. The MICROCARD Project.
   IHU Liryc, Université de Bordeaux, France, 22 February 2021. [bibtex] 
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   @lecture{potse-Liryc21,
    address = {Université de Bordeaux, France},
    author = {Mark Potse},
    month = {February},
    publisher = {IHU Liryc},
    title = {The MICROCARD Project},
    year = {2021}
   }

news about us

1. Leading the way in European Supercomputing; A projects info pack by CORDIS.
   European Commission, April 2022. [link]  [bibtex] 
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   @news{cordis-leading22,
    month = {April},
    publisher = {European Commission},
    title = {Leading the way in European Supercomputing; A projects info pack by CORDIS},
    url = {https://eurohpc-ju.europa.eu/sites/default/files/2022-04/ED-7309_CORDIS%20LotB_PIP%20European%20Supercomputing_Brochure_EN_LR%20acc.pdf},
    year = {2022}
   }
2. Digitalisierung: Simulationsplattform für Herzrhythmusstörungen.
   Karlsruher Institut für Technologie, May 2021. (KIT press release MICROCARD kickoff)  [link]  [bibtex] 
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   @news{KIT-kickoff-2021,
    month = {May},
    publisher = {Karlsruher Institut für Technologie},
    title = {Digitalisierung: Simulationsplattform für Herzrhythmusstörungen},
    url = {https://www.kit.edu/kit/29027.php},
    year = {2021}
   }
3. European High-Performance Computing Projects Handbook.
   European Technology Platform for High Performance Computing, August 2021. [link]  [bibtex] 
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   @news{etp4hpc-handbook-2021,
    month = {August},
    publisher = {European Technology Platform for High Performance Computing},
    title = {European High-Performance Computing Projects Handbook},
    url = {https://www.etp4hpc.eu/pujades/files/European%20HPC%20Handbook%202021%20final.pdf},
    year = {2021}
   }
4. Calcul haute performance : Inria impliqué dans huit projets européens.
   Inria, 26 May 2021. [link]  [bibtex] 
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   @news{inria-8-exascale-projects,
    month = {May},
    publisher = {Inria},
    title = {Calcul haute performance : Inria impliqué dans huit projets européens},
    url = {https://www.inria.fr/fr/calcul-haute-performance-euro-hpc-partenariats-europe},
    year = {2021}
   }
5. Liryc - 3 scientific projects selected by Horizon 2020 in support of medical treatment challenges.
   International newsletter of Université de Bordeaux Université de Bordeaux, February 2021. (to appear in June 2021)  [bibtex] 
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   @news{UBx-newsletter-2021-06,
    journal = {International newsletter of Université de Bordeaux},
    month = {February},
    publisher = {Université de Bordeaux},
    title = {Liryc - 3 scientific projects selected by Horizon 2020 in
   support of medical treatment challenges},
    year = {2021}
   }
6. Moisson de projets européens de recherche pour l’université.
   Université de Bordeaux, February 2021. [link]  [bibtex] 
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   @news{UBx-moisson-2020,
    month = {February},
    publisher = {Université de Bordeaux},
    title = {Moisson de projets européens de recherche pour l’université},
    url = {https://www.u-bordeaux.fr/Actualites/De-la-recherche/Moisson-de-projets-europeens-de-recherche-pour-l-universite},
    year = {2021}
   }
7. Strong success for European research projects.
   Université de Bordeaux, February 2021. [link]  [bibtex] 
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   @news{UBx-harvest-2020,
    month = {February},
    publisher = {Université de Bordeaux},
    title = {Strong success for European research projects},
    url = {https://www.u-bordeaux.com/News/Strong-success-for-European-research-projects},
    year = {2021}
   }
8. Kick-off of the European project MICROCARD.
   IHU Liryc, 19 April 2021. [link]  [bibtex] 
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   @news{Liryc-start-en,
    month = {April},
    publisher = {IHU Liryc},
    title = {Kick-off of the European project MICROCARD},
    url = {https://ihu-liryc.fr/en/actualites/b/lancement-du-projet-europeen-microcard},
    year = {2021}
   }
9. Lancement du Projet Européen MICROCARD.
   IHU Liryc, 19 April 2021. [link]  [bibtex] 
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   @news{Liryc-start-fr,
    month = {April},
    publisher = {IHU Liryc},
    title = {Lancement du Projet Européen MICROCARD},
    url = {https://ihu-liryc.fr/fr/actualites/b/lancement-du-projet-europeen-microcard},
    year = {2021}
   }
10. The European High Performance Computing Joint Undertaking launched thirteen R&I projects in April.
    EuroHPC, April 2021. [link]  [bibtex] 
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    @news{EuroHPC-start,
     month = {April},
     publisher = {EuroHPC},
     title = {The European High Performance Computing Joint Undertaking launched thirteen R\&I projects in April},
     url = {https://eurohpc-ju.europa.eu/news/european-high-performance-computing-joint-undertaking-launched-thirteen-ri-projects-april},
     year = {2021}
    }
11. Al via progetto europeo “MICROCARD”.
    Università degli Studi di Pavia, May 2021. [link]  [bibtex] 
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    @news{unipv56848,
     month = {May},
     publisher = {Università degli Studi di Pavia},
     title = {Al via progetto europeo “MICROCARD”},
     url = {http://news.unipv.it/?p=56848},
     year = {2021}
    }

miscellaneous

1. Numerical modeling of cardiac electrophysiology at the cellular scale.
   European Commission, 2021. (our record on the EU's CORDIS system)  [link]  [bibtex] 
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   @website{microcard-cordis,
    publisher = {European Commission},
    title = {Numerical modeling of cardiac electrophysiology at the cellular scale},
    url = {https://cordis.europa.eu/project/id/955495},
    year = {2021}
   }