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MICROCARD Publications

book chapters

  1. Marie Houillon, Jochen Klar, Tomas Stary, and Axel Loewe. Automated Software Metadata Conversion and Publication Based on CodeMeta.
    E-Science-Tage 2023: Empower Your Research – Preserve Your Data, pp. 228–234, heiBOOKS, November 2023. [link]  [bibtex] 

     

    @inbook{Houillon_Klar_Stary_Loewe_2023,
     author = {Houillon, Marie and Klar, Jochen and Stary, Tomas and Loewe, Axel},
     booktitle = {E-Science-Tage 2023: Empower Your Research – Preserve Your Data},
     doi = {10.11588/heibooks.1288.c18081},
     editor = {Heuveline, Vincent and Bisheh, Nina and Kling, Philipp},
     month = {November},
     pages = {228–234},
     publisher = {heiBOOKS},
     title = {Automated Software Metadata Conversion and Publication Based on {CodeMeta}},
     url = {https://dx.doi.org/10.11588/heibooks.1288.c18081},
     year = {2023}
    }

journal articles

  1. Giacomo Rosilho de Souza, Rolf Krause, and Simone Pezzuto. Boundary Integral Formulation of the Cell-by-Cell Model of Cardiac Electrophysiology.
    Engineering Analysis with Boundary Elements, vol. 158, pp. 239–251, 2024. [link]  [bibtex]  [arxiv] 

     

    @article{rosilhoBEM,
     author = {Rosilho de Souza, Giacomo and Krause, Rolf and Pezzuto, Simone},
     doi = {10.1016/j.enganabound.2023.10.021},
     journal = {Engineering Analysis with Boundary Elements},
     pages = {239-251},
     title = {Boundary Integral Formulation of the Cell-by-Cell Model of
    Cardiac Electrophysiology},
     url = {https://www.sciencedirect.com/science/article/pii/S0955799723005131},
     volume = {158},
     year = {2024}
    }
  2. Simone Scacchi, Piero Colli Franzone, Luca F Pavarino, Vincenzo Gionti, and Cesare Storti. Epicardial Dispersion of Repolarization Promotes the Onset of Reentry in Brugada Syndrome: A Numerical Simulation Study.
    Bulletin of Mathematical Biology, vol. 85, no. 3, pp. 22, Springer, 2023. [bibtex] 

     

    @article{scacchi2023epicardial,
     author = {Scacchi, Simone and Colli Franzone, Piero and Pavarino, Luca F and Gionti, Vincenzo and Storti, Cesare},
     journal = {Bulletin of Mathematical Biology},
     number = {3},
     pages = {22},
     publisher = {Springer},
     title = {Epicardial Dispersion of Repolarization Promotes the Onset of Reentry in Brugada Syndrome: A Numerical Simulation Study},
     volume = {85},
     year = {2023}
    }
  3. Andreu Porta-Sánchez, Andrea Mazzanti, Carmen Tarifa, Deni Kukavica, Alessandro Trancuccio, Muhammad Mohsin, Elisa Zanfrini, Andrea Perota, Roberto Duchi, Colli Franzone Hernandez-Lopez, Kevin, Luca F Pavarino, Simone Scacchi, and others. Unexpected impairment of INa current underpins reentrant arrhythmias in a knock-in swine model of Timothy syndrome.
    Nature Cardiovascular Research, vol. 2, no. 12, pp. 1291–1309, Nature Publishing Group UK London, 2023. [bibtex] 

     

    @article{porta2023unexpected,
     author = {Porta-S{\'a}nchez, Andreu and Mazzanti, Andrea and Tarifa, Carmen and Kukavica, Deni and Trancuccio, Alessandro and Mohsin, Muhammad and Zanfrini, Elisa and Perota, Andrea and Duchi, Roberto and Hernandez-Lopez, Kevin, Colli Franzone, Piero and Pavarino, Luca F and Scacchi, Simone  and others},
     journal = {Nature Cardiovascular Research},
     number = {12},
     pages = {1291--1309},
     publisher = {Nature Publishing Group UK London},
     title = {Unexpected impairment of INa current underpins reentrant arrhythmias in a knock-in swine model of Timothy syndrome},
     volume = {2},
     year = {2023}
    }
  4. Ngoc Mai Monica Huynh, Fatemeh Chegini, Luca Franco Pavarino, Martin Weiser, and Simone Scacchi. Convergence analysis of BDDC preconditioners for composite DG discretizations of the cardiac cell-by-cell model.
    SIAM J. Sci. Comp., vol. 45 (6), pp. A2836 – A2857, 2023. [bibtex] 

     

    @article{huynh:BDDC,
     author = {Huynh, Ngoc Mai Monica and Chegini, Fatemeh and Pavarino, Luca Franco and Weiser, Martin and Scacchi, Simone},
     journal = {SIAM J. Sci. Comp.},
     pages = {A2836 - A2857},
     title = {Convergence analysis of {BDDC} preconditioners for
    composite {DG} discretizations of the cardiac
    cell-by-cell model},
     volume = {45 (6)},
     year = {2023}
    }
  5. Joshua Steyer, Thomas Lilienkamp, Stefan Luther, and Ulrich Parlitz. The role of pulse timing in cardiac defibrillation.
    Frontiers in Network Physiology, vol. 2, pp. 1007585, January 2023. [link]  [bibtex] 

     

    @article{steyer2023_frontiers,
     author = {Steyer, Joshua and Lilienkamp, Thomas and Luther, Stefan and Parlitz, Ulrich},
     doi = {10.3389/fnetp.2022.1007585},
     journal = {Frontiers in Network Physiology},
     month = {January},
     pages = {1007585},
     title = {The role of pulse timing in cardiac defibrillation},
     url = {https://dx.doi.org/10.3389/fnetp.2022.1007585},
     volume = {2},
     year = {2023}
    }
  6. Emmanuelle Saillard and Mark Potse. À quoi servent les ordinateurs les plus puissants au monde ? Un exemple en cardiologie.
    The Conversation, December 2022. [link]  [bibtex] 

     

    @article{saillard:super,
     author = {Saillard, Emmanuelle and Potse, Mark},
     journal = {The Conversation},
     month = {December},
     title = {À quoi servent les ordinateurs les plus puissants au monde ? Un exemple en cardiologie},
     url = {https://theconversation.com/a-quoi-servent-les-ordinateurs-les-plus-puissants-au-monde-un-exemple-en-cardiologie-195266},
     year = {2022}
    }
  7. Nicolas Alejandro Barnafi, Ngoc Monica Mai Huynh, Luca Franco Pavarino, and Simone Scacchi. Parallel nonlinear solvers in computational cardiac electrophysiology.
    IFAC-PapersOnLine, vol. 55, no. 20, pp. 187–192, September 2022. [link]  [bibtex] 

     

    @article{barnafi_IFAC-Papers_2022,
     author = {Barnafi, Nicolas Alejandro and Huynh, Ngoc Monica Mai and Pavarino, Luca Franco and Scacchi, Simone},
     doi = {10.1016/j.ifacol.2022.09.093},
     journal = {IFAC-PapersOnLine},
     month = {September},
     number = {20},
     pages = {187-192},
     title = {Parallel nonlinear solvers in computational cardiac electrophysiology},
     url = {https://dx.doi.org/10.1016/j.ifacol.2022.09.093},
     volume = {55},
     year = {2022}
    }
  8. Ngoc Monica Mai Huynh, Luca Franco Pavarino, and Simone Scacchi. Scalable and Robust Dual-Primal Newton–Krylov Deluxe Solvers for Cardiac Electrophysiology with Biophysical Ionic Models.
    Vietnam Journal of Mathematics, vol. 50, pp. 1029–1052, September 2022. [link]  [bibtex] 

     

    @article{Huynh_VJOM_2022,
     author = {Huynh, Ngoc Monica Mai and Pavarino, Luca Franco and Scacchi, Simone},
     doi = {10.1007/s10013-022-00576-1},
     journal = {Vietnam Journal of Mathematics},
     month = {September},
     pages = {1029–1052},
     title = {Scalable and Robust Dual-Primal {N}ewton–{K}rylov Deluxe
    Solvers for Cardiac Electrophysiology with Biophysical Ionic Models},
     url = {https://dx.doi.org/10.1007/s10013-022-00576-1},
     volume = {50},
     year = {2022}
    }
  9. Antoine Amsaleg, Jorge Sánchez, Ralf Mikut, and Axel Loewe. Characterization of the Pace-and-Drive Capacity of the Human Sinoatrial Node: a 3D in silico Study.
    Biophysical Journal, vol. 121, no. 22, pp. 4247–4259, October 2022. [link]  [bibtex] 

     

    @article{Amsaleg-unknown-ID17996,
     author = {Amsaleg, Antoine and Sánchez, Jorge and Mikut, Ralf and Loewe, Axel},
     doi = {10.1016/j.bpj.2022.10.020},
     journal = {Biophysical Journal},
     month = {October},
     number = {22},
     pages = {4247-4259},
     title = {Characterization of the Pace-and-Drive Capacity of the Human
    Sinoatrial Node: a {3D} in silico Study},
     url = {https://dx.doi.org/10.1016/j.bpj.2022.10.020},
     volume = {121},
     year = {2022}
    }
  10. Jorge Sánchez and Axel Loewe. A Review of Healthy and Fibrotic Myocardium Microstructure Modeling and Corresponding Intracardiac Electrograms.
    Frontiers in Physiology, vol. 13, May 2022. [link]  [bibtex] 

     

    @article{Sanchez-2022-908069,
     author = {Sánchez, Jorge and Loewe, Axel},
     doi = {10.3389/fphys.2022.908069},
     journal = {Frontiers in Physiology},
     month = {May},
     title = {A Review of Healthy and Fibrotic Myocardium Microstructure
    Modeling and Corresponding Intracardiac Electrograms},
     url = {https://dx.doi.org/10.3389/fphys.2022.908069},
     volume = {13},
     year = {2022}
    }
  11. Kristian Gregorius Hustad and Xing Cai. Resource-Efficient Use of Modern Processor Architectures For Numerically Solving Cardiac Ionic Cell Models.
    Frontiers in Physiology, vol. 13, article nr. 904648, June 2022. [link]  [bibtex] 

     

    @article{Hustad2022_frontiers,
     article_number = {904648},
     author = {Hustad, Kristian Gregorius and Cai, Xing},
     doi = {10.3389/fphys.2022.904648},
     journal = {Frontiers in Physiology},
     month = {June},
     pages = {904648},
     title = {Resource-Efficient Use of Modern Processor Architectures
    For Numerically Solving Cardiac Ionic Cell Models},
     url = {https://dx.doi.org/10.3389/fphys.2022.904648},
     volume = {13},
     year = {2022}
    }
  12. Omer Berenfeld, Valentina Corino, Axel Loewe, Juan Pablo Martínez, and Jose F Rodriguez Matas. Editorial: Atrial Fibrillation - Technology for Diagnosis, Monitoring, and Treatment.
    Frontiers in Physiology, vol. 13, article nr. 848096, February 2022. [link]  [bibtex] 

     

    @article{EditorialAF_Frontiers,
     article_number = {848096},
     author = {Omer Berenfeld and Valentina Corino and Axel Loewe and Juan Pablo Martínez and Jose F Rodriguez Matas},
     doi = {10.3389/fphys.2022.848096},
     journal = {Frontiers in Physiology},
     month = {February},
     pages = {848096},
     title = {Editorial: {A}trial Fibrillation - Technology for Diagnosis, Monitoring, and Treatment},
     url = {https://dx.doi.org/10.3389/fphys.2022.848096},
     volume = {13},
     year = {2022}
    }
  13. Felix Bach, Jochen Klar, Axel Loewe, Jorge Sánchez, Gunnar Seemann, Yung-Lin Huang, and Robert Ulrich. The openCARP CDE – Concept for and implementation of a sustainable collaborative development environment for research software.
    Bausteine Forschungsdatenmanagement, vol. 2022, no. 1, March 2022. [link]  [bibtex] 

     

    @article{cde-fdm,
     author = {Bach, Felix and Klar, Jochen and Loewe, Axel and Sánchez, Jorge and Seemann, Gunnar and Huang, Yung-Lin and Ulrich, Robert},
     doi = {10.17192/bfdm.2022.1.8368},
     journal = {Bausteine Forschungsdatenmanagement},
     month = {March},
     number = {1},
     title = {The {openCARP CDE} -- Concept for and implementation of a sustainable collaborative development environment for research software},
     url = {https://dx.doi.org/10.17192/bfdm.2022.1.8368},
     volume = {2022},
     year = {2022}
    }
  14. Jorge Sánchez, Beatriz Trenor, Javier Saiz, Olaf Dössel, and Axel Loewe. Fibrotic Remodeling during Persistent Atrial Fibrillation: In Silico Investigation of the Role of Calcium for Human Atrial Myofibroblast Electrophysiology.
    Cells, vol. 10, pp. 2852, October 2021. [link]  [bibtex] 

     

    @article{sanchez-myofib,
     author = {Sánchez, Jorge and Trenor, Beatriz and Saiz, Javier and Dössel, Olaf and Loewe, Axel},
     doi = {10.3390/cells10112852},
     journal = {Cells},
     month = {October},
     pages = {2852},
     title = {Fibrotic Remodeling during Persistent Atrial Fibrillation:
    In Silico Investigation of the Role of Calcium for
    Human Atrial Myofibroblast Electrophysiology},
     url = {https://dx.doi.org/10.3390/cells10112852},
     volume = {10},
     year = {2021}
    }

conference articles

  1. Tomas Stary, Moritz Linder, and Axel Loewe. Sinoatrial Node Cell Response to Isoprenaline Stimulation and Hypocalcemia.
    Computing in Cardiology, vol. 50, Atlanta, Georgia, USA, October 2023. [link]  [bibtex] 

     

    @inproceedings{TomasCinC_2023,
     address = {Atlanta, Georgia, USA},
     author = {Stary, Tomas and Linder, Moritz and Loewe, Axel},
     booktitle = {Computing in Cardiology},
     month = {October},
     title = {Sinoatrial Node Cell Response to Isoprenaline Stimulation and Hypocalcemia},
     url = {https://cinc.org/archives/2023/pdf/CinC2023-114.pdf},
     volume = {50},
     year = {2023}
    }
  2. Joshua Steyer, Fatemeh Chegini, Mark Potse, Axel Loewe, and Martin Weiser. Continuity of Microscopic Cardiac Conduction in a Computational Cell-by-Cell Model.
    Computing in Cardiology, vol. 50, Atlanta, Georgia, USA, October 2023. [link]  [bibtex] 

     

    @inproceedings{JoshuaCinC_2023,
     address = {Atlanta, Georgia, USA},
     author = {Steyer, Joshua and Chegini, Fatemeh and Potse, Mark and Loewe, Axel and Weiser, Martin},
     booktitle = {Computing in Cardiology},
     doi = {10.22489/CinC.2023.385},
     month = {October},
     title = {Continuity of Microscopic Cardiac Conduction in a Computational Cell-by-Cell Model},
     url = {https://cinc.org/archives/2023/pdf/CinC2023-385.pdf},
     volume = {50},
     year = {2023}
    }
  3. Zeina Chehade and Yves Coudière. The Two-Point Finite Volume scheme for the Microscopic Bidomain Model of Electrocardiology.
    Tenth International Symposium on Finite Volumes for Complex Applications, Springer, October 2023. [link]  [bibtex]  [abstract] 

     

    @inproceedings{chehade:fvca2023,
     author = {Chehade, Zeina and Coudière, Yves},
     booktitle = {Tenth International Symposium on Finite Volumes for Complex Applications},
     doi = {10.1007/978-3-031-40864-9},
     month = {October},
     publisher = {Springer},
     title = {The Two-Point Finite Volume scheme for the Microscopic Bidomain Model of Electrocardiology},
     url = {https://dx.doi.org/10.1007/978-3-031-40864-9},
     year = {2023}
    }
  4. Tiago Trevisan Jost, Arun Thangamani, Raphaël Colin, Vincent Loechner, Stéphane Genaud, and Bérenger Bramas. GPU Code Generation of Cardiac Electrophysiology Simulation with MLIR.
    Euro-Par 2023: Parallel Processing, pp. 549–563, Springer Nature Switzerland, Cham, August 2023. [link]  [bibtex]  [abstract] 

     

    @inproceedings{trevisanjost:EP23,
     address = {Cham},
     author = {Trevisan Jost, Tiago and Thangamani, Arun and Colin, Rapha{\"e}l and Loechner, Vincent and Genaud, St{\'e}phane and Bramas, B{\'e}renger},
     booktitle = {Euro-Par 2023: Parallel Processing},
     doi = {10.1007/978-3-031-39698-4_37},
     editor = {Cano, Jos{\'e}
    and Dikaiakos, Marios D.
    and Papadopoulos, George A.
    and Peric{\`a}s, Miquel
    and Sakellariou, Rizos},
     month = {August},
     pages = {549-563},
     publisher = {Springer Nature Switzerland},
     title = {{GPU} Code Generation of Cardiac Electrophysiology Simulation with {MLIR}},
     url = {https://dx.doi.org/10.1007/978-3-031-39698-4_37},
     year = {2023}
    }
  5. Sofia Botti, Chiara Bartolucci, Rolf Krause, Luca F Pavarino, and Stefano Severi. An in silico Study of Cardiac hiPSC Electronic Maturation by Dynamic Clamp.
    International Conference on Functional Imaging and Modeling of the Heart, pp. 175–183, 2023. [bibtex] 

     

    @inproceedings{botti2023silico,
     author = {Botti, Sofia and Bartolucci, Chiara and Krause, Rolf and Pavarino, Luca F and Severi, Stefano},
     booktitle = {International Conference on Functional Imaging and Modeling of the Heart},
     organization = {Springer},
     pages = {175--183},
     title = {An in silico Study of Cardiac hiPSC Electronic Maturation by Dynamic Clamp},
     year = {2023}
    }
  6. Fatemeh Chegini, Algiane Froehly, Ngoc Mai Monica Huynh, Luca Pavarino, Mark Potse, Simone Scacchi, and Martin Weiser. Efficient numerical methods for simulating cardiac electrophysiology with cellular resolution.
    Int. Conf. Comp. Meth. Coupled Problems Sci. Eng. 2023, Chania, Greece, June 2023. [link]  [bibtex] 

     

    @inproceedings{WeiserEtAl2023,
     address = {Chania, Greece},
     author = {Chegini, Fatemeh and Froehly, Algiane and Huynh, Ngoc Mai Monica and Pavarino, Luca and Potse, Mark and Scacchi, Simone and Weiser, Martin},
     booktitle = {Int. Conf. Comp. Meth. Coupled Problems Sci. Eng. 2023},
     doi = {10.23967/c.coupled.2023.004},
     month = {June},
     title = {Efficient numerical methods for simulating cardiac
    electrophysiology with cellular resolution},
     url = {https://www.scipedia.com/public/_2023f},
     year = {2023}
    }
  7. Lia Gander, Rolf Krause, Martin Weiser, Francisco Sahli Costabal, and Simone Pezzuto. On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology in the Presence of Fibrosis.
    Functional Imaging and Modeling of the Heart, vol. 13958 in Lecture Notes in Computer Science, pp. 137–146, Springer, Cham, June 2023. [link]  [bibtex] 

     

    @inproceedings{GanderEikoDiff23,
     address = {Cham},
     author = {Gander, Lia and Krause, Rolf and Weiser, Martin and Sahli Costabal, Francisco and Pezzuto, Simone},
     booktitle = {Functional Imaging and Modeling of the Heart},
     doi = {10.1007/978-3-031-35302-4_14},
     editor = {Bernard, Olivier and
    Clarysse, Patrick and
    Duchateau, Nicolas and
    Ohayon, Jacques and
    Viallon, Magalie},
     month = {June},
     pages = {137-146},
     publisher = {Springer},
     series = {Lecture Notes in Computer Science},
     title = {On the Accuracy of Eikonal Approximations in Cardiac Electrophysiology
    in the Presence of Fibrosis},
     url = {https://dx.doi.org/10.1007/978-3-031-35302-4_14},
     volume = {13958},
     year = {2023}
    }
  8. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Effect of Gap Junction Distribution, Size, and Shape on the Conduction Velocity in a Cell-by-Cell Model for Electrophysiology.
    Functional Imaging and Modeling of the Heart, vol. 13958 in Lecture Notes in Computer Science, pp. 117–126, Springer, Cham, June 2023. [link]  [bibtex] 

     

    @inproceedings{deSouzaGaps23,
     address = {Cham},
     author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
     booktitle = {Functional Imaging and Modeling of the Heart},
     doi = {10.1007/978-3-031-35302-4_12},
     editor = {Bernard, Olivier and
    Clarysse, Patrick and
    Duchateau, Nicolas and
    Ohayon, Jacques and
    Viallon, Magalie},
     month = {June},
     pages = {117-126},
     publisher = {Springer},
     series = {Lecture Notes in Computer Science},
     title = {Effect of Gap Junction Distribution, Size, and Shape
    on the Conduction Velocity in a Cell-by-Cell Model for Electrophysiology},
     url = {https://dx.doi.org/10.1007/978-3-031-35302-4_12},
     volume = {13958},
     year = {2023}
    }
  9. Joshua Steyer, Lourdes Patricia Martínez Diaz, Laura Anna Unger, and Axel Loewe. Simulated Excitation Patterns in the Atria and Their Corresponding Electrograms.
    Functional Imaging and Modeling of the Heart, pp. 204–212, Springer Nature Switzerland, Cham, June 2023. [link]  [bibtex] 

     

    @inproceedings{steyer:fimh23,
     address = {Cham},
     author = {Steyer, Joshua and Diaz, Lourdes Patricia Mart{\'i}nez and Unger, Laura Anna and Loewe, Axel},
     booktitle = {Functional Imaging and Modeling of the Heart},
     doi = {10.1007/978-3-031-35302-4_21},
     editor = {Bernard, Olivier
    and Clarysse, Patrick
    and Duchateau, Nicolas
    and Ohayon, Jacques
    and Viallon, Magalie},
     month = {June},
     pages = {204--212},
     publisher = {Springer Nature Switzerland},
     title = {Simulated Excitation Patterns in the Atria and Their Corresponding Electrograms},
     url = {https://dx.doi.org/10.1007/978-3-031-35302-4_21},
     year = {2023}
    }
  10. Arun Thangamani, Tiago Trevisan Jost, Vincent Loechner, Stéphane Genaud, and Bérenger Bramas. Lifting Code Generation of Cardiac Physiology Simulation to Novel Compiler Technology.
    Proceedings of the 21st ACM/IEEE International Symposium on Code Generation and Optimization in CGO 2023, pp. 68–80, Association for Computing Machinery, New York, NY, USA, February 2023. [link]  [bibtex] 

     

    @inproceedings{10.1145/3579990.3580008,
     address = {New York, NY, USA},
     author = {Thangamani, Arun and Jost, Tiago Trevisan and Loechner, Vincent and Genaud, St\'{e}phane and Bramas, B\'{e}renger},
     booktitle = {Proceedings of the 21st ACM/IEEE International Symposium on Code Generation and Optimization},
     doi = {10.1145/3579990.3580008},
     month = {February},
     pages = {68-80},
     publisher = {Association for Computing Machinery},
     series = {CGO 2023},
     title = {Lifting Code Generation of Cardiac Physiology Simulation to Novel Compiler Technology},
     url = {https://doi.org/10.1145/3579990.3580008},
     year = {2023}
    }
  11. Sofia Botti, Chiara Bartolucci, Claudia Altomare, Lucio Barile, Rolf Krause, Luca F Pavarino, and Stefano Severi. Numerical Simulations Indicate I K1 Dynamic Clamp Can Unveil the Phenotype of Cardiomyocytes Derived from Induced Pluripotent Stem Cells.
    2022 Computing in Cardiology (CinC), vol. 498, pp. 1–4, 2022. [bibtex] 

     

    @inproceedings{botti2022numerical,
     author = {Botti, Sofia and Bartolucci, Chiara and Altomare, Claudia and Barile, Lucio and Krause, Rolf and Pavarino, Luca F and Severi, Stefano},
     booktitle = {2022 Computing in Cardiology (CinC)},
     organization = {IEEE},
     pages = {1--4},
     title = {Numerical Simulations Indicate I K1 Dynamic Clamp Can Unveil the Phenotype of Cardiomyocytes Derived from Induced Pluripotent Stem Cells},
     volume = {498},
     year = {2022}
    }
  12. Amina Guermouche. Combining Uncore Frequency and Dynamic Power Capping to Improve Power Savings.
    IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 1028–1037, May 2022. [link]  [bibtex] 

     

    @inproceedings{guermouche:ipdpsw22,
     author = {Guermouche, Amina},
     booktitle = {IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)},
     doi = {10.1109/IPDPSW55747.2022.00164},
     month = {May},
     pages = {1028-1037},
     title = {Combining Uncore Frequency and Dynamic Power Capping to Improve Power Savings},
     url = {https://dx.doi.org/10.1109/IPDPSW55747.2022.00164},
     year = {2022}
    }
  13. Jorge Sánchez and Axel Loewe. Mechanical Consequences of Electrical Remodeling due to Persistent Atrial Fibrillation: a Cellular Level Sensitivity Analysis.
    Computing in Cardiology, vol. 49, Tampere, Finland, September 2022. [link]  [bibtex] 

     

    @inproceedings{JorgeCinC_2022,
     address = {Tampere, Finland},
     author = {Sánchez, Jorge and Loewe, Axel},
     booktitle = {Computing in Cardiology},
     month = {September},
     title = {Mechanical Consequences of Electrical Remodeling due to Persistent Atrial Fibrillation: a Cellular Level Sensitivity Analysis },
     url = {https://cinc.org/2022/Program/accepted/37_Preprint.pdf},
     volume = {49},
     year = {2022}
    }
  14. Mark Potse, Luca Cirrottola, and Algiane Froehly. A practical algorithm to build geometric models of cardiac muscle structure.
    8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), Oslo, Norway, June 2022. [link]  [bibtex] 

     

    @inproceedings{potse-eccomas22,
     address = {Oslo, Norway},
     author = {Potse, Mark and Cirrottola, Luca and Froehly, Algiane},
     booktitle = {8th European Congress on Computational Methods in
    Applied Sciences and Engineering (ECCOMAS)},
     doi = {10.23967/eccomas.2022.027},
     month = {June},
     title = {A practical algorithm to build geometric models of
    cardiac muscle structure},
     url = {https://dx.doi.org/10.23967/eccomas.2022.027},
     year = {2022}
    }
  15. Martin Weiser and Fatemeh Chegini. Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods.
    7th International Conference on Computational and Mathematical Biomedical Engineering (CMBE22), vol. 2, pp. 528–531, June 2022. [link]  [bibtex] 

     

    @inproceedings{WeiserChegini2022,
     author = {Weiser, Martin and Chegini, Fatemeh},
     booktitle = {7th International Conference on Computational and
    Mathematical Biomedical Engineering (CMBE22)},
     month = {June},
     pages = {528--531},
     title = {Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods},
     url = {https://www.compbiomed.net/2022/cmbe-proceedings.htm},
     volume = {2},
     year = {2022}
    }
  16. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Parallel-in-time multirate explicit stabilized method for the monodomain model in cardiac electrophysiology.
    7th International Conference on Computational and Mathematical Biomedical Engineering (CMBE22), vol. 2, pp. 535–538, June 2022. [link]  [bibtex] 

     

    @inproceedings{rosilhodesouza-cmbe22,
     author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
     booktitle = {7th International Conference on Computational and
    Mathematical Biomedical Engineering (CMBE22)},
     month = {June},
     pages = {535--538},
     title = {Parallel-in-time multirate explicit stabilized method
    for the monodomain model in cardiac electrophysiology},
     url = {https://www.compbiomed.net/2022/cmbe-proceedings.htm},
     volume = {2},
     year = {2022}
    }

conference abstracts

  1. Fritz Göbel, Terry Cojean, and Hartwig Anzt. BDDC preconditioning on GPUs for Cardiac Simulations.
    29th International European Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 2023. [bibtex] 

     

    @abstract{europar-poster,
     address = {Limassol, Cyprus},
     author = {Göbel, Fritz and Cojean, Terry and Anzt, Hartwig},
     booktitle = {29th International European Conference on Parallel and Distributed Computing},
     month = {August},
     title = {BDDC preconditioning on GPUs for Cardiac Simulations},
     year = {2023}
    }
  2. Tomas Stary, Marie Houillon, Jochen Klar, and Axel Loewe. Pipelines for Software Metadata Conversion and Publication.
    deRSE23 - Conference for Research Software Engineering in Germany, Potsdam, February 2023. [pdf] [conference] [bibtex]  [abstract] 

     

    @abstract{deRSE-CI,
     address = {Potsdam},
     author = {Stary, Tomas and Houillon, Marie and Klar, Jochen and Loewe, Axel},
     booktitle = {deRSE23 - Conference for Research Software Engineering in Germany},
     conference_url = {https://de-rse23.sciencesconf.org/program},
     month = {February},
     pdf = {docs/deRSE2023.pdf},
     title = {Pipelines for Software Metadata Conversion and Publication},
     year = {2023}
    }
  3. Marie Houillon, Jochen Klar, Tomas Stary, and Axel Loewe. Automated Software Metadata Conversion and Publication Based on CodeMeta.
    E-Science-Tage 2023: Data to Knowledge, Heidelberg, March 2023. [pdf] [conference] [poster] [bibtex]  [abstract] 

     

    @abstract{eScience23-CI,
     address = {Heidelberg},
     author = {Houillon, Marie and Klar, Jochen and Stary, Tomas and Loewe, Axel},
     booktitle = {E-Science-Tage 2023: Data to Knowledge},
     conference_url = {https://e-science-tage.de/index.php/en/agenda23},
     month = {March},
     pdf = {docs/2023_manuscript_poster_e_science_tage_1109-2.pdf},
     poster_url = {https://archiv.ub.uni-heidelberg.de/volltextserver/33137/},
     title = {Automated Software Metadata Conversion and Publication Based on CodeMeta},
     year = {2023}
    }
  4. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Boundary Element Method for the Cell-by-Cell Model in Cardiac Electrophysiology.
    15th World Congress on Computational Mechanics, Yokohama, Japan (Virtual), August 2022. [bibtex] 

     

    @abstract{rosilho:wccm22,
     address = {Yokohama, Japan (Virtual)},
     author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
     booktitle = {15th World Congress on Computational Mechanics},
     month = {August},
     title = {Boundary Element Method for the Cell-by-Cell Model in Cardiac Electrophysiology},
     year = {2022}
    }
  5. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Parallel-in-Time Multirate Explicit Stabilized method for the Monodomain model in Cardiac Electrophysiology.
    PinT 2022: 11th Workshop on Parallel-in-Time Integration, Marseille, France, July 2022. [link]  [bibtex] 

     

    @abstract{rosilho:pint22,
     address = {Marseille, France},
     author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
     booktitle = {PinT 2022: 11th Workshop on Parallel-in-Time Integration},
     month = {July},
     title = {Parallel-in-Time Multirate Explicit Stabilized method for the Monodomain model in Cardiac Electrophysiology},
     url = {https://www.cirm-math.fr/RepOrga/2642/Abstracts/RozillodeSuza.pdf},
     year = {2022}
    }
  6. Mark Potse. Microscale cardiac electrophysiology on exascale supercomputers.
    SIAM Conference on Parallel Processing for Scientific Computing (PP22), Seattle, WA, USA, February 2022. [link]  [bibtex] 

     

    @abstract{potse-pp22,
     address = {Seattle, WA, USA},
     author = {Potse, Mark},
     booktitle = {SIAM Conference on Parallel Processing for Scientific Computing (PP22)},
     month = {February},
     organization = {SIAM},
     title = {Microscale cardiac electrophysiology on exascale supercomputers},
     url = {https://www.siam.org/Portals/0/Conferences/PP22/PP22_ABSTRACTS.pdf},
     year = {2022}
    }

invited lectures

  1. Fritz Göbel, Terry Cojean, Hartwig Anzt, and Marcel Koch. Implementing a GPU-resident BDDC preconditioner for cardiac simulations on sub-cellular resolution.
    SIAM Conference on Parallel Processing for Scientific Computing, Baltimore, Maryland, USA, March 2024. [bibtex] 

     

    @lecture{siampp,
     address = {Baltimore, Maryland, USA},
     author = {Göbel, Fritz and Cojean, Terry and Anzt, Hartwig and Koch, Marcel},
     booktitle = {SIAM Conference on Parallel Processing for Scientific Computing},
     month = {March},
     title = {Implementing a GPU-resident BDDC preconditioner for cardiac simulations on sub-cellular resolution},
     year = {2024}
    }
  2. Axel Loewe. Digital chimeras to enable in silico clinical trials of ablation strategies to terminate atrial fibrillation and prevent recurrence.
    RICAM Special Semester on Mathematical Methods in Medicine, Linz, Austria, 30 November 2023. [bibtex] 

     

    @lecture{loewe-RICAM,
     address = {Linz, Austria},
     author = {Axel Loewe},
     month = {November},
     publisher = {RICAM Special Semester on Mathematical Methods in Medicine},
     title = {Digital chimeras to enable in silico clinical trials of ablation strategies to terminate atrial fibrillation and prevent recurrence},
     year = {2023}
    }
  3. Mark Potse. Numerical modeling of cardiac electrophysiology at the cellular scale.
    Symposium ``Where computation meets cardiology'', Maastricht, The Netherlands, November 2023. [bibtex] 

     

    @lecture{potse-mumc23,
     address = {Maastricht, The Netherlands},
     author = {Potse, Mark},
     booktitle = {Symposium ``Where computation meets cardiology''},
     month = {November},
     title = {Numerical modeling of cardiac electrophysiology at the cellular scale},
     year = {2023}
    }
  4. Fritz Göbel, Hartwig Anzt, Terry Cojean, and Marcel Koch. Implementing Platform Portable Solvers and Preconditioners for Cardiac Simulations in the MICROCARD Project.
    10th International Congress on Industrial and Applied Mathematics, Tokyo, Japan, August 2023. [bibtex] 

     

    @lecture{iciam,
     address = {Tokyo, Japan},
     author = {Göbel, Fritz and Anzt, Hartwig and Cojean, Terry and Koch, Marcel},
     booktitle = {10th International Congress on Industrial and Applied Mathematics},
     month = {August},
     title = {Implementing Platform Portable Solvers and Preconditioners for Cardiac Simulations in the MICROCARD Project},
     year = {2023}
    }
  5. Lea Strubberg. To couple models for cardiac electrophysiology with transparent interface conditions.
    International Conference on Operations Research 2023, Hamburg, Germany, August 2023. [bibtex] 

     

    @lecture{strubberg:OR23,
     address = {Hamburg, Germany},
     author = {Strubberg, Lea},
     booktitle = {International Conference on Operations Research 2023},
     month = {August},
     title = {To couple models for cardiac electrophysiology with transparent interface conditions},
     year = {2023}
    }
  6. Fatemeh Chegini. Higher order time Integration for EMI Cardiac Electrophysiology Simulations with Nested Subset Selection and BDDC Preconditioning.
    ICIAM 2023, Tokyo, Japan, August 2023. [bibtex] 

     

    @lecture{chegini:iciam23,
     address = {Tokyo, Japan},
     author = {Chegini, Fatemeh},
     booktitle = {ICIAM 2023},
     month = {August},
     title = {Higher order time Integration for EMI Cardiac Electrophysiology Simulations with Nested Subset Selection and BDDC Preconditioning},
     year = {2023}
    }
  7. Fritz Göbel, Hartwig Anzt, Terry Cojean, and Marcel Koch. Distributed Preconditioning for Cardiac Simulations on modern GPUs with BDDC.
    21st Copper Mountain Conference On Multigrid Methods, Copper Mountain, Colorado, USA, April 2023. [bibtex] 

     

    @lecture{multigrid-conference,
     address = {Copper Mountain, Colorado, USA},
     author = {Göbel, Fritz and Anzt, Hartwig and Cojean, Terry and Koch, Marcel},
     booktitle = {21st Copper Mountain Conference On Multigrid Methods},
     month = {April},
     title = {Distributed Preconditioning for Cardiac Simulations on modern GPUs with BDDC},
     year = {2023}
    }
  8. Mark Potse. Large Numerical modeling of cardiac electrophysiology at the cellular scale.
    EuroHPC Summit: European Supercomputing Excellence in the Exascale Era, Göteborg, Sweden, March 2023. [link]  [bibtex] 

     

    @lecture{potse23eurohpc,
     address = {G{\"o}teborg, Sweden},
     author = {Potse, Mark},
     booktitle = {EuroHPC Summit: European Supercomputing Excellence
    in the Exascale Era},
     month = {March},
     organization = {EuroHPC},
     title = {Large Numerical modeling of cardiac electrophysiology at the cellular scale},
     url = {https://www.eurohpcsummit.eu/#monday},
     year = {2023}
    }
  9. Giacomo Rosilho de Souza, Simone Pezzuto, and Rolf Krause. Boundary integral formulation and numerical experiments on the Cell-by-Cell model for electrophysiology.
    VII ECCOMAS Young Investigators Conference, Porto, Portugal, June 2023. [link]  [bibtex] 

     

    @lecture{rosilho:eccomas23,
     address = {Porto, Portugal},
     author = {Rosilho de Souza, Giacomo and Pezzuto, Simone and Krause, Rolf},
     booktitle = {VII ECCOMAS Young Investigators Conference},
     doi = {10.5281/zenodo.8393047},
     month = {June},
     title = {Boundary integral formulation and numerical experiments on the Cell-by-Cell model for electrophysiology},
     url = {https://dx.doi.org/10.5281/zenodo.8393047},
     year = {2023}
    }
  10. Ngoc Mai Monica Huynh. Scalable BDDC preconditioners for hybrid DG discretizations of cardiac microscopic models.
    VII ECCOMAS Young Investigators Conference, Oporto, Portugal, June 2023. [bibtex] 

     

    @lecture{huynhECCOMAS23,
     address = {Oporto, Portugal},
     author = {Huynh, Ngoc Mai Monica},
     booktitle = {VII ECCOMAS Young Investigators Conference},
     month = {June},
     title = {Scalable {BDDC} preconditioners for hybrid {DG} discretizations of cardiac microscopic models},
     year = {2023}
    }
  11. Ngoc Mai Monica Huynh. Robust preconditioned solvers for cardiac electrical models at microscales.
    Math2Product 2023, Taormina, Italy, June 2023. [bibtex] 

     

    @lecture{huynhM2P2023,
     address = {Taormina, Italy},
     author = {Huynh, Ngoc Mai Monica},
     booktitle = {Math2Product 2023},
     month = {June},
     title = {Robust preconditioned solvers for cardiac electrical models at microscales},
     year = {2023}
    }
  12. Fatemeh Chegini. Implementing the µCARP simulator.
    openCARP User Workshop, Karlsruhe, Germany, May 2023. [bibtex] 

     

    @lecture{chegini:openCARP23,
     address = {Karlsruhe, Germany},
     author = {Chegini, Fatemeh},
     booktitle = {openCARP User Workshop},
     month = {May},
     title = {Implementing the µCARP simulator},
     year = {2023}
    }
  13. Martin Weiser. The EMI model and some implications on discretization and solution.
    openCARP User Workshop, Karlsruhe, Germany, May 2023. [bibtex] 

     

    @lecture{weiser:openCARP23,
     address = {Karlsruhe, Germany},
     author = {Weiser, Martin},
     booktitle = {openCARP User Workshop},
     month = {May},
     title = {The EMI model and some implications on discretization and solution},
     year = {2023}
    }
  14. Ngoc Mai Monica Huynh. Dual-primal domain decomposition preconditioners for composite discontinuous Galerkin discretizations in cardiac electrophysiology.
    Simula Research Laboratory, Norway, May 2023. [bibtex] 

     

    @lecture{huynhEMIx23,
     address = {Simula Research Laboratory, Norway},
     author = {Huynh, Ngoc Mai Monica},
     month = {May},
     title = {Dual-primal domain decomposition preconditioners for composite discontinuous 
    Galerkin discretizations in cardiac electrophysiology},
     year = {2023}
    }
  15. Ngoc Mai Monica Huynh. BDDC preconditioners for hybrid discontinuous Galerkin discretizations in cardiac electrophysiology.
    SIAM Conference on Computational Science and Engineering, Amsterdam, NL, 1 March 2023. [bibtex] 

     

    @lecture{huynhSIAMCSE2023,
     address = {Amsterdam, NL},
     author = {Huynh, Ngoc Mai Monica},
     booktitle = {SIAM Conference on Computational Science and Engineering},
     month = {March},
     title = {{BDDC} preconditioners for hybrid discontinuous {Galerkin} discretizations in cardiac electrophysiology},
     year = {2023}
    }
  16. Giacomo Rosilho de Souza, Rolf Krause, and Simone Pezzuto. Boundary Integral Formulation of the Cell-by-Cell Model of Cardiac Electrophysiology.
    Simula Research Laboratory, Norway, June 2023. [bibtex] 

     

    @lecture{pezzutoEMIx23,
     address = {Simula Research Laboratory, Norway},
     author = {Rosilho de Souza, Giacomo and Krause, Rolf and Pezzuto, Simone},
     month = {June},
     title = {Boundary Integral Formulation of the Cell-by-Cell Model of
    Cardiac Electrophysiology},
     year = {2023}
    }
  17. Giacomo Rosilho de Souza, Rolf Krause, and Simone Pezzuto. Boundary Integral Formulation of the Cell-by-Cell Model of Cardiac Electrophysiology.
    SIAM Conference on Computational Science and Engineering, Amsterdam, The Netherlands, February 2023. [bibtex] 

     

    @lecture{pezzutoSIAM23,
     address = {Amsterdam, The Netherlands},
     author = {Rosilho de Souza, Giacomo and Krause, Rolf and Pezzuto, Simone},
     booktitle = {SIAM Conference on Computational Science and Engineering},
     month = {February},
     title = {Boundary Integral Formulation of the Cell-by-Cell Model of
    Cardiac Electrophysiology},
     year = {2023}
    }
  18. Martin Weiser, Fatemeh Chegini, and Thomas Steinke. Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods.
    SIAM Conference on Computational Science and Engineering, Amsterdam, NL, 3 March 2023. [bibtex] 

     

    @lecture{weiserSIAMCSE2023,
     address = {Amsterdam, NL},
     author = {Weiser, Martin and Chegini, Fatemeh and Steinke, Thomas},
     booktitle = {SIAM Conference on Computational Science and Engineering},
     month = {March},
     title = {Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods},
     year = {2023}
    }
  19. Edward Vigmond. Challenges and opportunities for cardiac simulation at exascale.
    HiPEAC 2023, Toulouse, January 2023. (HeLP-DC Workshop on Heterogeneous and Low-Power Data Center technologies[bibtex] 

     

    @lecture{vigmond23hipeac,
     address = {Toulouse},
     author = {Vigmond, Edward},
     booktitle = {HiPEAC 2023},
     month = {January},
     title = {Challenges and opportunities for cardiac simulation at exascale},
     year = {2023}
    }
  20. Martin Weiser. Exploiting the Flexibility of Spectral Deferred Correction Methods.
    TU Hamburg, 14 November 2022. [bibtex] 

     

    @lecture{weiserTUHH2022,
     address = {TU Hamburg},
     author = {Weiser, Martin},
     month = {November},
     title = {Exploiting the Flexibility of Spectral Deferred Correction Methods},
     year = {2022}
    }
  21. Fatemeh Chegini. Higher order time integration with algebraic adaptivity in a cell by cell discretization of cardiac excitation.
    WCCMC 2022, Yokohama, Japan, August 2022. [bibtex] 

     

    @lecture{cheginiWCCMC22,
     address = {Yokohama, Japan},
     author = {Chegini, Fatemeh},
     booktitle = {WCCMC 2022},
     month = {August},
     title = {Higher order time integration with algebraic adaptivity in a cell by cell discretization of cardiac excitation},
     year = {2022}
    }
  22. Martin Weiser and Fatemeh Chegini. Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods.
    International Multigrid Conference, Lugano, CH, 25 August 2022. [bibtex] 

     

    @lecture{weiserIMG2022,
     address = {Lugano, CH},
     author = {Weiser, Martin and Chegini, Fatemeh},
     booktitle = {International Multigrid Conference},
     month = {August},
     title = {Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods},
     year = {2022}
    }
  23. Martin Weiser and Fatemeh Chegini. Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods.
    Computational and Mathematical Biomedical Engineering, Milan, Italy, 28 June 2022. [bibtex] 

     

    @lecture{weiserCMBE2022,
     address = {Milan, Italy},
     author = {Weiser, Martin and Chegini, Fatemeh},
     booktitle = {Computational and Mathematical Biomedical Engineering},
     month = {June},
     title = {Adaptive multirate integration of cardiac electrophysiology with spectral deferred correction methods},
     year = {2022}
    }
  24. Mark Potse. The MICROCARD project and gender.
    #RESET your project with gender, 15 November 2022. (webinar[link]  [bibtex] 

     

    @lecture{potse-RESET3,
     author = {Potse, Mark},
     booktitle = {\#RESET your project with gender},
     month = {November},
     title = {The {MICROCARD} project and gender},
     url = {https://wereset.eu/newsroom/news/webinar-reset-your-research-project-with-gender/},
     year = {2022}
    }
  25. Yves Coudière and Zeina Chehade. Towards finite volume methods for the cardiac micromodel.
    Workshop on Discrete Duality Finite Volume Method and Applications, Marseille, France, October 2022. [bibtex] 

     

    @lecture{coudiere22cirm,
     address = {Marseille, France},
     author = {Coudi\`ere, Yves and Chehade, Zeina},
     booktitle = {Workshop on Discrete Duality Finite Volume Method and Applications},
     month = {October},
     title = {Towards finite volume methods for the cardiac micromodel},
     year = {2022}
    }
  26. Martin Weiser. Theoretically optimal inexact spectral deferred correction methods.
    U Pavia, Italy, June 2022. [bibtex] 

     

    @lecture{weiser22Pavia,
     address = {U Pavia, Italy},
     author = {Weiser, Martin},
     month = {June},
     title = {Theoretically optimal inexact spectral deferred correction methods},
     year = {2022}
    }
  27. Mark Potse. Modeling the heart, cell by cell.
    HiPEAC 2022, Budapest, June 2022. (HeLP-DC Workshop on Heterogeneous and Low-Power Data Center technologies[bibtex] 

     

    @lecture{potse22hipeac,
     address = {Budapest},
     author = {Potse, Mark},
     booktitle = {HiPEAC 2022},
     month = {June},
     title = {Modeling the heart, cell by cell},
     year = {2022}
    }
  28. Mark Potse. MICROCARD: modeling the heart cell by cell.
    TERATEC Forum, Paris, June 2022. (workshop HPC Technologies and Health[link]  [bibtex] 

     

    @lecture{potse22teratec,
     address = {Paris},
     author = {Potse, Mark},
     booktitle = {TERATEC Forum},
     month = {June},
     title = {{MICROCARD}: modeling the heart cell by cell},
     url = {https://teratec.eu/gb/forum/atelier_2.html},
     year = {2022}
    }
  29. Terry Cojean, Fritz Göbel, and Marie Houillon. Porting the openCARP cardiac electrophysiology simulation framework to GPU architectures.
    Fifth ISC Workshop on HPC Applications in Precision Medecine, Hamburg, Germany, 2 June 2022. [bibtex] 

     

    @lecture{2022_OpenCARP_Ginkgo_HAPM_Workshop,
     address = {Hamburg, Germany},
     author = {Cojean, Terry and Göbel, Fritz and Houillon, Marie},
     month = {June},
     publisher = {Fifth ISC Workshop on HPC Applications in Precision Medecine},
     title = {Porting the openCARP cardiac electrophysiology simulation framework to {GPU} architectures},
     year = {2022}
    }
  30. Axel Loewe. Computational Cardiac Modeling – Synergies with Machine Learning.
    Annual Meeting of the German Cardiac Society, Mannheim, Germany, 22 April 2022. [bibtex] 

     

    @lecture{loewe-DGK22,
     address = {Mannheim, Germany},
     author = {Axel Loewe},
     month = {April},
     publisher = {Annual Meeting of the German Cardiac Society},
     title = {Computational Cardiac Modeling -- Synergies with Machine Learning},
     year = {2022}
    }
  31. Simone Pezzuto, Giacomo Rosilho de Souza, and Rolf Krause. Boundary integral discretization of the cell-to-cell bidomain model of cardiac electrophysiology.
    8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), Oslo, Norway, June 2022. [link]  [bibtex] 

     

    @lecture{pezzuto-eccomas22,
     address = {Oslo, Norway},
     author = {Pezzuto, Simone and Rosilho de Souza, Giacomo and Krause, Rolf},
     booktitle = {8th European Congress on Computational Methods in
    Applied Sciences and Engineering (ECCOMAS)},
     month = {June},
     title = {Boundary integral discretization of the cell-to-cell
    bidomain model of cardiac electrophysiology},
     url = {https://www.eccomas2022.org/admin/files/fileabstract/a692.pdf},
     year = {2022}
    }
  32. Mark Potse. MICROCARD: Numerical modeling of cardiac electrophysiology at the cellular scale.
    OpenCARP Contributor Meeting, online, 14 March 2022. [bibtex] 

     

    @lecture{potse-openCarpCM22,
     address = {online},
     author = {Mark Potse},
     month = {March},
     publisher = {OpenCARP Contributor Meeting},
     title = {{MICROCARD}: Numerical modeling of cardiac electrophysiology at the cellular scale},
     year = {2022}
    }
  33. Vincent Loechner. Modern Compiler Technology to Optimize Code From Ionic Models.
    Colloquium of the ITI IRMIA++, Université de Strasbourg, France, 17 March 2022. [bibtex] 

     

    @lecture{loechner-IRMIA22,
     address = {Université de Strasbourg, France},
     author = {Vincent Loechner},
     month = {March},
     publisher = {Colloquium of the ITI IRMIA++},
     title = {Modern Compiler Technology to Optimize Code From Ionic Models},
     year = {2022}
    }
  34. M. Weiser and T. Steinke. Numerik auf Höchstleistungsrechnern.
    Kolloquium GI Regionalgruppe Berlin-Brandenburg, online, 25 November 2021. [bibtex] 

     

    @lecture{weiserSteinkeGI2021,
     address = {online},
     author = {Weiser, M. and Steinke, T.},
     booktitle = {Kolloquium GI Regionalgruppe Berlin-Brandenburg},
     month = {November},
     title = {Numerik auf {H\"{o}chstleistungsrechnern}},
     year = {2021}
    }
  35. Mark Potse. The MICROCARD Project.
    IHU Liryc, Université de Bordeaux, France, 22 February 2021. [bibtex] 

     

    @lecture{potse-Liryc21,
     address = {Université de Bordeaux, France},
     author = {Mark Potse},
     month = {February},
     publisher = {IHU Liryc},
     title = {The {MICROCARD} Project},
     year = {2021}
    }

news about us

  1. Leading the way in European Supercomputing; A projects info pack by CORDIS.
    European Commission, April 2022. [link]  [bibtex] 

     

    @news{cordis-leading22,
     month = {April},
     publisher = {European Commission},
     title = {Leading the way in {European} Supercomputing; A projects info pack by {CORDIS}},
     url = {https://eurohpc-ju.europa.eu/sites/default/files/2022-04/ED-7309_CORDIS%20LotB_PIP%20European%20Supercomputing_Brochure_EN_LR%20acc.pdf},
     year = {2022}
    }
  2. Digitalisierung: Simulationsplattform für Herzrhythmusstörungen.
    Karlsruher Institut für Technologie, May 2021. (KIT press release MICROCARD kickoff[link]  [bibtex] 

     

    @news{KIT-kickoff-2021,
     month = {May},
     publisher = {Karlsruher Institut für Technologie},
     title = {{Digitalisierung: Simulationsplattform für Herzrhythmusstörungen}},
     url = {https://www.kit.edu/kit/29027.php},
     year = {2021}
    }
  3. European High-Performance Computing Projects Handbook.
    European Technology Platform for High Performance Computing, August 2021. [link]  [bibtex] 

     

    @news{etp4hpc-handbook-2021,
     month = {August},
     publisher = {European Technology Platform for High Performance Computing},
     title = {European High-Performance Computing Projects Handbook},
     url = {https://www.etp4hpc.eu/pujades/files/European%20HPC%20Handbook%202021%20final.pdf},
     year = {2021}
    }
  4. Calcul haute performance : Inria impliqué dans huit projets européens.
    Inria, 26 May 2021. [link]  [bibtex] 

     

    @news{inria-8-exascale-projects,
     month = {May},
     publisher = {Inria},
     title = {Calcul haute performance : Inria impliqué dans huit projets européens},
     url = {https://www.inria.fr/fr/calcul-haute-performance-euro-hpc-partenariats-europe},
     year = {2021}
    }
  5. Liryc - 3 scientific projects selected by Horizon 2020 in support of medical treatment challenges.
    International newsletter of Université de Bordeaux, Université de Bordeaux, February 2021. (to appear in June 2021[bibtex] 

     

    @news{UBx-newsletter-2021-06,
     journal = {International newsletter of Université de Bordeaux},
     month = {February},
     publisher = {Université de Bordeaux},
     title = {Liryc - 3 scientific projects selected by Horizon 2020 in
    support of medical treatment challenges},
     year = {2021}
    }
  6. Moisson de projets européens de recherche pour l’université.
    Université de Bordeaux, February 2021. [link]  [bibtex] 

     

    @news{UBx-moisson-2020,
     month = {February},
     publisher = {Université de Bordeaux},
     title = {Moisson de projets européens de recherche pour l’université},
     url = {https://www.u-bordeaux.fr/Actualites/De-la-recherche/Moisson-de-projets-europeens-de-recherche-pour-l-universite},
     year = {2021}
    }
  7. Strong success for European research projects.
    Université de Bordeaux, February 2021. [link]  [bibtex] 

     

    @news{UBx-harvest-2020,
     month = {February},
     publisher = {Université de Bordeaux},
     title = {Strong success for {European} research projects},
     url = {https://www.u-bordeaux.com/News/Strong-success-for-European-research-projects},
     year = {2021}
    }
  8. Kick-off of the European project MICROCARD.
    IHU Liryc, 19 April 2021. [link]  [bibtex] 

     

    @news{Liryc-start-en,
     month = {April},
     publisher = {IHU Liryc},
     title = {Kick-off of the {European} project {MICROCARD}},
     url = {https://ihu-liryc.fr/en/actualites/b/lancement-du-projet-europeen-microcard},
     year = {2021}
    }
  9. Lancement du Projet Européen MICROCARD.
    IHU Liryc, 19 April 2021. [link]  [bibtex] 

     

    @news{Liryc-start-fr,
     month = {April},
     publisher = {IHU Liryc},
     title = {Lancement du Projet Européen MICROCARD},
     url = {https://ihu-liryc.fr/fr/actualites/b/lancement-du-projet-europeen-microcard},
     year = {2021}
    }
  10. The European High Performance Computing Joint Undertaking launched thirteen R&I projects in April.
    EuroHPC, April 2021. [link]  [bibtex] 

     

    @news{EuroHPC-start,
     month = {April},
     publisher = {EuroHPC},
     title = {The {European} High Performance Computing Joint Undertaking launched thirteen {R\&I} projects in April},
     url = {https://eurohpc-ju.europa.eu/news/european-high-performance-computing-joint-undertaking-launched-thirteen-ri-projects-april},
     year = {2021}
    }
  11. Al via progetto europeo ``MICROCARD''.
    Università degli Studi di Pavia, May 2021. [link]  [bibtex] 

     

    @news{unipv56848,
     month = {May},
     publisher = {Università degli Studi di Pavia},
     title = {Al via progetto europeo ``{MICROCARD}''},
     url = {http://news.unipv.it/?p=56848},
     year = {2021}
    }

miscellaneous

  1. Simone Pezzuto and Martin Weiser. Minisymposium on Multilevel methods for cardiac simulations.
    International Multigrid Conference, Lugano, CH, 25 August 2022. [link]  [bibtex] 

     

    @workshop{pezzutoWeiserIMG22,
     address = {Lugano, CH},
     author = {Pezzuto, Simone and Weiser, Martin},
     booktitle = {International Multigrid Conference},
     month = {August},
     title = {Minisymposium on Multilevel methods for cardiac simulations},
     url = {https://www.img2022.usi.ch/index.php?option=com_content&view=article&id=6&Itemid=295},
     year = {2022}
    }
  2. European Researchers Night.
    exhibition, The MICROCARD consortium, Bordeaux, France, September 2022. (MICROCARD was present with a movie and flyers[link]  [bibtex] 

     

    @exhibition{ERN22-Bordeaux,
     address = {Bordeaux, France},
     month = {September},
     publisher = {The MICROCARD consortium},
     title = {European Researchers Night},
     url = {https://www.u-bordeaux.fr/en/research/science-and-society/european-researchers-night},
     year = {2022}
    }
  3. MICROCARD est un projet européen qui cherche à combattre les maladies cardiovasculaires ... en codant !.
    flyer, The MICROCARD consortium, September 2022. [link]  [bibtex] 

     

    @flyer{flyer-MICROCARD-ERN22-fr,
     month = {September},
     publisher = {The MICROCARD consortium},
     title = {{MICROCARD} est un projet européen qui cherche à combattre
    les maladies cardiovasculaires ... en codant !},
     url = {https://microcard.eu/docs/flyer1.pdf},
     year = {2022}
    }
  4. Numerical modeling of cardiac electrophysiology at the cellular scale.
    website, European Commission, 2021. (our record on the EU's CORDIS system[link]  [bibtex] 

     

    @website{microcard-cordis,
     publisher = {European Commission},
     title = {Numerical modeling of cardiac electrophysiology at the cellular scale},
     url = {https://cordis.europa.eu/project/id/955495},
     year = {2021}
    }

LinkedIn: @project MICROCARD

Twitter: @P_Microcard

Latest news

13 September: Interview with Fatemeh Chegini

Latest in a series of interviews with young MICROCARD members, our interview with Fatemeh Chegini was posted on LinkedIn today.


more news

Agenda

12-16 May

ISC High Performance 2024 in Hamburg

16-18 May

Heart Rhythm 2024 meeting in Boston

Friday 24 May

14:00 WP7 meeting

Tuesday 28 May

14:00 WP4+5 meeting

Thursday 30 May

16:00 June EB meeting


full agenda

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